Class Jaspar

java.lang.Object
org.snpeff.motif.Jaspar
All Implemented Interfaces:
Iterable<Pwm>

public class Jaspar extends Object implements Iterable<Pwm>
Load PWM matrices from a Jaspar file
Author:
pablocingolani
  • Constructor Details

    • Jaspar

      public Jaspar()
  • Method Details

    • getPwm

      public Pwm getPwm(String pwmId)
    • iterator

      public Iterator<Pwm> iterator()
      Specified by:
      iterator in interface Iterable<Pwm>
    • load

      public void load(String jasparMatrixFile)
      Load matrix file
      Parameters:
      jasparMatrixFile -
    • setVerbose

      public void setVerbose(boolean verbose)