Package org.snpeff.align
Class VcfRefAltAlign
java.lang.Object
org.snpeff.align.NeedlemanWunsch
org.snpeff.align.VcfRefAltAlign
Needleman-Wunsch (global sequence alignment) algorithm for sequence alignment
Only used for short strings (algorithm is not optimized)
- Author:
- pcingola
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpeff.align.NeedlemanWunsch
getAlignment, getAlignmentScore, getOffset, setDeletion, setMatch, setMissMatch, setUseSpace, toString
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Field Details
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MAX_SIZE
public static final int MAX_SIZE- See Also:
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Constructor Details
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VcfRefAltAlign
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Method Details
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align
- Overrides:
align
in classNeedlemanWunsch
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getVariantType
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setVariantType
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