Package org.snpeff.coverage
Class CoverageChr
java.lang.Object
org.snpeff.coverage.CoverageChr
- All Implemented Interfaces:
Serializable
Base by base coverage (one chromsome)
- Author:
- pcingola
- See Also:
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Constructor Summary
Constructors -
Method Summary
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Constructor Details
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CoverageChr
public CoverageChr(int len)
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Method Details
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avgCoverage
public double avgCoverage(int start, int end) Calculate Coverage per base- Returns:
- Average coverage per base
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coverage
public long coverage(int start, int end) Calculate Coverage per base- Returns:
- Average coverage per base
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getCount
public short[] getCount() -
inc
public void inc(int start, int end) Increment a region- Parameters:
start
-end
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toString
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