Uses of Enum Class
org.snpeff.snpEffect.ErrorWarningType
Packages that use ErrorWarningType
Package
Description
-
Uses of ErrorWarningType in org.snpeff.interval
Methods in org.snpeff.interval that return ErrorWarningTypeModifier and TypeMethodDescriptionExon.sanityCheck
(Variant variant) Check that the base in the exon corresponds with the one in the SNPTranscript.sanityCheck
(Variant variant) Perfom some baseic chekcs, return error type, if any -
Uses of ErrorWarningType in org.snpeff.snpEffect
Methods in org.snpeff.snpEffect that return ErrorWarningTypeModifier and TypeMethodDescriptionstatic ErrorWarningType
Returns the enum constant of this class with the specified name.static ErrorWarningType[]
ErrorWarningType.values()
Returns an array containing the constants of this enum class, in the order they are declared.Methods in org.snpeff.snpEffect with parameters of type ErrorWarningTypeModifier and TypeMethodDescriptionvoid
VariantEffect.addErrorMessage
(ErrorWarningType errmsg) void
VariantEffects.addErrorWarning
(Variant variant, ErrorWarningType errwarn) void
VariantEffect.addErrorWarningInfo
(ErrorWarningType errwarn) Add an error or warningvoid
VariantEffect.addInfoMessage
(ErrorWarningType infomsg) void
VariantEffect.addWarningMessge
(ErrorWarningType warnmsg) -
Uses of ErrorWarningType in org.snpeff.snpEffect.testCases.integration
Methods in org.snpeff.snpEffect.testCases.integration with parameters of type ErrorWarningTypeModifier and TypeMethodDescriptionvoid
TestCasesIntegrationBase.checkTranscriptError
(String[] args, ErrorWarningType warningType) Run a predictor and check if the expected warnings appear -
Uses of ErrorWarningType in org.snpeff.util
Fields in org.snpeff.util with type parameters of type ErrorWarningTypeMethods in org.snpeff.util that return types with arguments of type ErrorWarningTypeMethods in org.snpeff.util with parameters of type ErrorWarningTypeModifier and TypeMethodDescriptionstatic void
Log.silenceWarning
(ErrorWarningType warningType) static void
Log.warning
(ErrorWarningType warnType, String msg) Show a warning message (up to MAX_ERRORS times)