Package org.snpeff.binseq.indexer
package org.snpeff.binseq.indexer
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ClassDescriptionOverlapFilter<T extends BinarySequence>Indicate whether an overlap between two sequences should be considered or notOnly allow overlaps between sequences mapped to same/different partitionOnly allow sequences with different IDs to be overlappedOverlapRessult<T extends BinarySequence>An object used to store overlap parametersSequenceIndexer<T extends BinarySequence>A collection of sequences that are indexed using some algorithm Note: The ID is just the position in the array.SuffixIndexerNmer<T extends BinarySequence>Index all suffixes of all the sequences (it indexes using Nmers).