Uses of Package
org.snpeff.stats
Packages that use org.snpeff.stats
Package
Description
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Classes in org.snpeff.stats used by org.snpeff.coverageClassDescriptionCounters indexed by key.Counters indexed by 'type' (type is a generic string that can mean anything)
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Classes in org.snpeff.stats used by org.snpeff.intervalClassDescriptionCounters indexed by 'type' (type is a generic string that can mean anything)
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Classes in org.snpeff.stats used by org.snpeff.nextProtClassDescriptionCounters indexed by 'type' (type is a generic string that can mean anything)
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Classes in org.snpeff.stats used by org.snpeff.snpEffect.commandLine
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Classes in org.snpeff.stats used by org.snpeff.statsClassDescriptionHow many changes per position do we have in a chromosome.Counters indexed by 'type' (type is a generic string that can mean anything)Count for each 'type' and 'gene'.Calculate statistics on genotypeA simple class that does some basic statistics on integer numbersMine marker intervals: I.e.Observed over expected values (o/e) ratios E.g.: CpG dinucleotides in a sequencePerform stats by analyzing some samplesCalculate Ts/Tv rations per sample (transitions vs transversions)
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Classes in org.snpeff.stats used by org.snpeff.stats.plot