Uses of Class
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
Packages that use TestCasesIntegrationBase
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Uses of TestCasesIntegrationBase in org.snpeff.snpEffect.testCases.integration
Subclasses of TestCasesIntegrationBase in org.snpeff.snpEffect.testCases.integrationModifier and TypeClassDescriptionclass
Base class for integration testsclass
Test caseclass
Test 'apply' method (apply variant to marker)class
Test cases for annotation of protein interaction lociclass
Test cases for cancer effect (difference betwee somatic an germline tissue)class
Test cases for canonical transcript selectionclass
Test caseclass
Test case: Make sure VCF entries have some 'coding' (transcript biotype), even when biotype info is not available (e.g.class
Test caseclass
Test COVID19 buildclass
Test Loss of Function predictionclass
Test cases on deletionsclass
Test caseclass
Test cases for other 'effect' issuesclass
Test case for EMBL file parsing (database creation)class
Test cases for error reportingclass
Test case for exon framesclass
Filter transcriptsclass
Test case for EMBL file parsing (database creation)class
Test case for GFF3 file parsingclass
Test case for GTF22 file parsingclass
Test random SNP changesclass
Test cases for HGVS notation on insertionsclass
Test caseclass
Test caseclass
Test case HGSV: Hard casesclass
Test cases for HGVS notation on insertionsclass
Test random SNP changesclass
Test case HGSV for MNPsclass
Test cases for HGVS notationclass
Test random SNP changesclass
Test random SNP changesclass
Test case where VCF entries are huge (e.g.class
Test Loss of Function predictionclass
Test caseclass
Calculate missense over silent ratioclass
Test mixed variantsclass
Test random SNP changesclass
Test Motif databasesclass
Test NextProt databasesclass
Test Nonsense mediated decay predictionclass
Test case where VCF entries has no sequence change (either REF=ALT or ALT=".")class
Protein translation test caseclass
Test cases for annotation of protein interaction lociclass
Test case for GTF22 file parsingclass
Test caseclass
Test case for sequence ontologyclass
Test SNP variantsclass
Invoke all integration test casesclass
Invoke multi thread integration testclass
Test random SNP changesclass
Test cases for variantsclass
Test SNP variantsclass
Test case where VCF entries hit a transcript that has errorsclass
Test cases for variantsclass
VCF annotations test casesclass
Test case