Class TestCasesHgvsDnaDup

java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesBase
org.snpeff.snpEffect.testCases.unity.TestCasesHgvsDnaDup

public class TestCasesHgvsDnaDup extends TestCasesBase
Test case
  • Constructor Details

    • TestCasesHgvsDnaDup

      public TestCasesHgvsDnaDup()
  • Method Details

    • init

      protected void init()
      Overrides:
      init in class TestCasesBase
    • test_01

      @Test public void test_01()
    • test_02

      @Test public void test_02()
    • test_03

      @Test public void test_03()
      Test case from http://www.hgvs.org/mutnomen/recs-DNA.html g.5dupT (or g.5dup, not g.5_6insT) denotes a duplication ("insertion") of the T nucleotide at position 5 in the genomic reference sequence changing ACTCTGTGCC to ACTCTTGTGCC
    • test_04

      @Test public void test_04()
      Test case from http://www.hgvs.org/mutnomen/recs-DNA.html g.7dupT (or g.7dup, not g.5dupT, not g.7_8insT) denotes a duplication ("insertion") of the T nucleotide at position 7 in the genomic reference sequence changing AGACTTTGTGCC to AGACTTTTGTGCC
    • test_05

      @Test public void test_05()
      Test case from http://www.hgvs.org/mutnomen/recs-DNA.html g.7_8dup (or g.7_8dupTG, not g.5_6dup, not g.8_9insTG) denotes a TG duplication in the TG-tandem repeat sequence changing ACTTTGTGCC to ACTTTGTGTGCC
    • test_06

      @Test public void test_06()
    • test_07

      @Test public void test_07()
      Duplication with variant shifted towards 3-prime
    • test_08

      @Test public void test_08()
      Duplication with variant shifted towards 3-prime
    • test_09

      @Test public void test_09()
      Dup in intron
    • test_10

      @Test public void test_10()
      Dup in exon-intron boundary
    • test_11

      @Test public void test_11()
      Dup in intron-exon boundary