Class TestCasesIntegrationGtf22
java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationGtf22
Test case for GTF22 file parsing
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Constructor Details
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TestCasesIntegrationGtf22
public TestCasesIntegrationGtf22()
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Method Details
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after
@AfterEach public void after() -
before
@BeforeEach public void before()- Overrides:
before
in classTestCasesIntegrationBase
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testCaseHg37_61_ENST00000250838
@Test public void testCaseHg37_61_ENST00000250838() -
testCaseHg37_61_ENST00000331397
@Test public void testCaseHg37_61_ENST00000331397() -
testCaseMm37_61_ENSMUSG00000051951
@Test public void testCaseMm37_61_ENSMUSG00000051951() -
testCaseMm37_61_ENSMUST00000070533
@Test public void testCaseMm37_61_ENSMUST00000070533()
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