Class MarkerTypes

java.lang.Object
org.snpeff.coverage.MarkerTypes

public class MarkerTypes extends Object
Create a list of marker types (names or labels for markers)
Author:
pcingola
  • Constructor Details

    • MarkerTypes

      public MarkerTypes()
  • Method Details

    • addType

      public void addType(Marker marker, String type)
    • getSubType

      public String getSubType(Marker marker)
      Some markers have sub-types
      Parameters:
      marker -
      Returns:
    • getType

      public String getType(Marker marker)
      Get marker type
      Parameters:
      marker -
      Returns:
    • getTypeRank

      public String getTypeRank(Marker marker)
      Get marker + rank (in case of exon or intron)
      Parameters:
      marker -
      Returns:
    • isType

      public boolean isType(Marker m, String mtype)
    • markerTypesClass

      public List<String> markerTypesClass()
      List of markers whose types are based on class names
      Returns: