Class SnpEffCmdBuildNextProt

java.lang.Object
org.snpeff.SnpEff
org.snpeff.snpEffect.commandLine.SnpEffCmdBuildNextProt
All Implemented Interfaces:
CommandLine

public class SnpEffCmdBuildNextProt extends SnpEff
Parse NetxProt XML file and build a database http://www.nextprot.org/
Author:
pablocingolani
  • Constructor Details

    • SnpEffCmdBuildNextProt

      public SnpEffCmdBuildNextProt()
  • Method Details

    • parseArgs

      public void parseArgs(String[] args)
      Description copied from class: SnpEff
      Parse command line arguments
      Specified by:
      parseArgs in interface CommandLine
      Overrides:
      parseArgs in class SnpEff
    • run

      public boolean run()
      Run main analysis
      Specified by:
      run in interface CommandLine
      Overrides:
      run in class SnpEff
    • usage

      public void usage(String message)
      Description copied from class: SnpEff
      Show 'usage' message and exit with an error code '-1'
      Specified by:
      usage in interface CommandLine
      Overrides:
      usage in class SnpEff