Class TestCasesGenePvalueList
java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesGenePvalueList
GenePvalueList statistics test case
- Author:
- pcingola
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
test_01()
Combined p-value : MINvoid
test_02()
Combined p-value : AVGvoid
test_03()
Combined p-value : AVG10void
test_04()
Complementary CDF for Chi^2 distributionvoid
test_05()
Combined p-value : FISHER_CHI_SQUAREvoid
test_06()
Combined p-value : Z_SCORESvoid
test_07()
Combined p-value : FDRvoid
test_08()
Test quantilevoid
test_09()
Test CDF (cumulative distribution function)
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Field Details
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EPSILON
public static final double EPSILON- See Also:
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Constructor Details
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TestCasesGenePvalueList
public TestCasesGenePvalueList()
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Method Details
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test_01
@Test public void test_01()Combined p-value : MIN -
test_02
@Test public void test_02()Combined p-value : AVG -
test_03
@Test public void test_03()Combined p-value : AVG10 -
test_04
@Test public void test_04()Complementary CDF for Chi^2 distribution -
test_05
@Test public void test_05()Combined p-value : FISHER_CHI_SQUARE -
test_06
@Test public void test_06()Combined p-value : Z_SCORES -
test_07
@Test public void test_07()Combined p-value : FDRReference for this test: http://stat.ethz.ch/R-manual/R-devel/library/stats/html/p.adjust.html
R code: set.seed(123) x <- rnorm(50, mean = c(rep(0, 25), rep(3, 25))) p <- 2*pnorm(sort(-abs(x))) p.adjust(p, "fdr")
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test_08
@Test public void test_08()Test quantile -
test_09
@Test public void test_09()Test CDF (cumulative distribution function)
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