Class TestCasesIntegrationHgvsIns
java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsIns
Test cases for HGVS notation on insertions
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Field Summary
Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
Insertion / duplication issuesvoid
Insertion / duplication issuesvoid
Insertion / duplication issuesvoid
Insertion / duplication issuesvoid
Insertion / duplication issuesvoid
This frameshift caused an exception while processing HGVS protein notationMethods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Constructor Details
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TestCasesIntegrationHgvsIns
public TestCasesIntegrationHgvsIns()
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Method Details
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test_02_hgvs_insertions_chr1
@Test public void test_02_hgvs_insertions_chr1()Insertion / duplication issues -
test_03_hgvs_insertions_chr3
@Test public void test_03_hgvs_insertions_chr3()Insertion / duplication issues -
test_04_hgvs_insertions_chr4
@Test public void test_04_hgvs_insertions_chr4()Insertion / duplication issues -
test_05_hgvs_insertions_chr19
@Test public void test_05_hgvs_insertions_chr19()Insertion / duplication issues -
test_06_hgvs_insertions_chr7
@Test public void test_06_hgvs_insertions_chr7()Insertion / duplication issues -
test_07_hgvs_insertions1
@Test public void test_07_hgvs_insertions1()This frameshift caused an exception while processing HGVS protein notation
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