Class TestCasesIntegrationProteinInteraction

java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationProteinInteraction

public class TestCasesIntegrationProteinInteraction extends TestCasesIntegrationBase
Test cases for annotation of protein interaction loci
  • Constructor Details

    • TestCasesIntegrationProteinInteraction

      public TestCasesIntegrationProteinInteraction()
  • Method Details

    • test_01_within_protein_interactions

      @Test public void test_01_within_protein_interactions()
      Annotate within protein interaction
    • test_02_protein_protein_interactions

      @Test public void test_02_protein_protein_interactions()
      Annotate protein-protein interactions
    • test_03_protein_protein_interactions_hgvs

      @Test public void test_03_protein_protein_interactions_hgvs()
      Annotate protein-structural interaction Make sure that the HGVS notation positions (DNA and Protein) are consistent. When the variant is realigned, the protein-interaction annotation should not appear