Class TestCasesIntegrationCircularGenome
java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationCircularGenome
Test case
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Field Summary
Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
void
void
void
void
void
void
Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Constructor Details
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TestCasesIntegrationCircularGenome
public TestCasesIntegrationCircularGenome()
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Method Details
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testCase_01_CircularGenome
@Test public void testCase_01_CircularGenome() -
testCase_02_CircularGenome
@Test public void testCase_02_CircularGenome() -
testCase_02_CircularGenome_end
@Test public void testCase_02_CircularGenome_end() -
testCase_03_CircularGenome
@Test public void testCase_03_CircularGenome() -
testCase_04_CircularGenome
@Test public void testCase_04_CircularGenome() -
testCase_05_CircularGenome_ExonsOrder
@Test public void testCase_05_CircularGenome_ExonsOrder() -
testCase_06_CircularGenome_ExonsOrder
@Test public void testCase_06_CircularGenome_ExonsOrder()
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