Class IntegrationTest

java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.IntegrationTest
Direct Known Subclasses:
TestCasesIntegrationSnpEff, TestCasesIntegrationSnpEffMultiThread

public class IntegrationTest extends TestCasesIntegrationBase
Base class for integration tests
Author:
pcingola
  • Field Details

  • Constructor Details

    • IntegrationTest

      public IntegrationTest()
  • Method Details

    • command

      public String command(CommandLine command)
      Run a 'command' and return everything printed to stdout
    • command

      public void command(CommandLine command, String expectedOutputFile)
      Run a command and compare to an expected output (form a file)
    • showCommand

      public String showCommand(CommandLine command)
      Show command (as a command line)
    • showDiff

      public String showDiff(String s1, String s2)
      Show the difference between who string (multi-line strings)
    • showDiffLine

      public String showDiffLine(String l1, String l2)
      Show difference between two lines