Class TestCasesIntegrationBuildPdb

java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBuildPdb

public class TestCasesIntegrationBuildPdb extends TestCasesIntegrationBase
Test cases for annotation of protein interaction loci
  • Constructor Details

    • TestCasesIntegrationBuildPdb

      public TestCasesIntegrationBuildPdb()
  • Method Details

    • test_01

      @Test public void test_01()
      Interaction within protein using PDB entry '1A12'
    • test_02

      @Test public void test_02()
      Interaction between two proteins PDB entry 4OVU should have an interaction between chains 'A' and 'B' (Min distance :2.45 Angstrom) AA.pos AA chr:pos transcript 22 E 3:178916679 NM_006218.2 533 R 5:67591006 NM_181523.2