Class TestCasesIntegrationHgvsHard
java.lang.Object
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsHard
Test case HGSV: Hard cases
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Field Summary
Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
Test some 'dup' form chr17void
void
void
void
void
HGVS (protein) was reporting a wrong deletion lengthvoid
Some difficult HGVS test caseMethods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Constructor Details
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TestCasesIntegrationHgvsHard
public TestCasesIntegrationHgvsHard()
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Method Details
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test_hgvs_dup
@Test public void test_hgvs_dup()Test some 'dup' form chr17 -
test_hgvs_md_chr17
@Test public void test_hgvs_md_chr17() -
test_hgvs_walk_and_roll_1
@Test public void test_hgvs_walk_and_roll_1() -
test_hgvs_walk_and_roll_2
@Test public void test_hgvs_walk_and_roll_2() -
test_hgvs_walk_and_roll_3
@Test public void test_hgvs_walk_and_roll_3() -
test_HgvsP_deleteion_length
@Test public void test_HgvsP_deleteion_length()HGVS (protein) was reporting a wrong deletion length -
test_HgvsP_deleteion_length_2
@Test public void test_HgvsP_deleteion_length_2()Some difficult HGVS test case
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