cmaple::Params Member List

This is the complete list of members for cmaple::Params, including all inherited members.

allow_replace_input_tree	cmaple::Params
aln_format_str	cmaple::Params
aln_path	cmaple::Params
aLRT_SH_half_epsilon	cmaple::Params
aLRT_SH_replicates	cmaple::Params
compute_aLRT_SH	cmaple::Params
failure_limit_sample	cmaple::Params
failure_limit_subtree	cmaple::Params
failure_limit_subtree_short_search	cmaple::Params
fixed_blengths	cmaple::Params
fixed_min_blength	cmaple::Params
input_treefile	cmaple::Params
make_consistent	cmaple::Params
max_blength_factor	cmaple::Params
min_blength_factor	cmaple::Params
min_blength_mid_factor	cmaple::Params
mutation_update_period	cmaple::Params
num_threads	cmaple::Params
num_tree_improvement	cmaple::Params
output_aln	cmaple::Params
output_aln_format_str	cmaple::Params
output_prefix	cmaple::Params
output_testing	cmaple::Params
overwrite_output	cmaple::Params
ran_seed	cmaple::Params
ref_path	cmaple::Params
ref_seqname	cmaple::Params
seq_type_str	cmaple::Params
shallow_tree_search	cmaple::Params
strict_stop_seeking_placement_sample	cmaple::Params
strict_stop_seeking_placement_subtree	cmaple::Params
strict_stop_seeking_placement_subtree_short_search	cmaple::Params
sub_model_str	cmaple::Params
thresh_diff_fold_update	cmaple::Params
thresh_diff_update	cmaple::Params
thresh_entire_tree_improvement	cmaple::Params
thresh_log_lh_failure	cmaple::Params
thresh_log_lh_sample	cmaple::Params
thresh_log_lh_subtree	cmaple::Params
thresh_log_lh_subtree_short_search	cmaple::Params
thresh_placement_cost	cmaple::Params
thresh_placement_cost_short_search	cmaple::Params
threshold_prob	cmaple::Params
threshold_prob2	cmaple::Params
tree_format_str	cmaple::Params
tree_search_type_str	cmaple::Params