Bio.SearchIO.InfernalIO.infernal_tab module
Bio.SearchIO parser for Infernal tabular output format.
- class Bio.SearchIO.InfernalIO.infernal_tab.InfernalTabParser(handle, _fmt=None)
Bases:
_BaseInfernalParserParser for the Infernal tabular format.
- __init__(handle, _fmt=None)
Initialize the class.
- __iter__()
Iterate over InfernalTabParser, yields query results.
- __annotate_func__ = None
- __annotations_cache__ = {}
- __firstlineno__ = 262
- __static_attributes__ = ('fmt', 'handle', 'line')
- class Bio.SearchIO.InfernalIO.infernal_tab.InfernalTabIndexer(filename)
Bases:
SearchIndexerIndexer class for Infernal tabular output.
- __init__(filename)
Initialize the class.
- __iter__()
Iterate over the file handle; yields key, start offset, and length.
- get_raw(offset)
Return the raw bytes string of a QueryResult object from the given offset.
- __abstractmethods__ = frozenset({})
- __annotate_func__ = None
- __annotations_cache__ = {}
- __firstlineno__ = 402
- __static_attributes__ = ('_query_id_idx',)