Bio.SearchIO.InfernalIO.infernal_text module
Bio.SearchIO parser for Infernal plain text output format.
- class Bio.SearchIO.InfernalIO.infernal_text.InfernalTextParser(handle)
Bases:
_BaseInfernalParserParser for the Infernal text output.
- __init__(handle)
Initialize the class.
- __iter__()
Iterate over query results.
- __annotate_func__ = None
- __annotations_cache__ = {}
- __firstlineno__ = 59
- __static_attributes__ = ('_meta', 'handle', 'line')
- class Bio.SearchIO.InfernalIO.infernal_text.InfernalTextIndexer(*args, **kwargs)
Bases:
SearchIndexerIndexer class for Infernal plain text output.
- __init__(*args, **kwargs)
Initialize the class.
- __iter__()
Iterate over InfernalTextIndexer; yields query results’ key, offsets, 0.
- get_raw(offset)
Return the raw record from the file as a bytes string.
- __abstractmethods__ = frozenset({})
- __annotate_func__ = None
- __annotations_cache__ = {}
- __firstlineno__ = 477
- __static_attributes__ = ('_preamble',)